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don't take me wrong, dyeatman, just a small correction.

those 2 set_tris functions should be inside main, just before the do..while statement... ;)

use:

srand(get_rtcc());

it generates the seed based on current time counter.

You should do the following
#include <18F452.h>
#fuses HS,NOWDT,NOPROTECT,NOLVP
#use delay(clock=4000000) /* one instruction=1us? */
#use rs232(baud=9600, xmit=PIN_C6, rcv=PIN_C7 ...

I just don't understand one thing... If you're setting Port B as Output, why are you reading Input from it?

Also, like Felix Althaus said, if you're really interested in reading Input, you missed t ...

If it is only '0's and '1's, why don't you convert it to ninary format? instad of 98920 bytes, you'll have 98920 bits, 12365 bytes.

If you just want to protect it from reading, add PROTECT to your #fuses clause. If there's a NOPROTECT already there, exchange it with PROTECT

If you want to protect against incidental overwrite, a ...